Paper Title
Virtual Screening of Flavonoids in Search of a Potential Drug Candidate for COVID-19: Applications of DFT Study and Molecular Docking
Article Identifiers
Registration ID: IJNRD_199406
Published ID: IJNRD2306394
DOI: http://doi.one/10.1729/Journal.35185
Authors
Anamika Singh , Nikita Tiwari , Anshu Gautam , Monika Gupta
Keywords
Chloroquine, DFT, electrophilicity index, Flavonoids, hydrophobic interactions, molecular docking, SARS-CoV-2.
Abstract
The COVID-19 pandemic brought on by SARS-CoV-2 had a significant impact on and altered the state of the planet. Here, we used computational models to assess certain Flavonoids bioactivity as SARS-CoV-2 M provirus (6LU7) inhibitors. We described the optimization of Flavonoids using B3LYP/6-311G+(d,p) level theory and density functional theory (DFT). The free energy, dipole moment, and chemical reactivity descriptors were determined using DFT simulations. The SARS-CoV-2 M provirus was subjected to molecular docking to investigate the interactions and binding affinities of every Flavonoid with that protein. To assess its binding affinity, the well-known medication Chloroquine of the SARS-CoV-2 major protease was also docked. In addition to the DFT results, docking studies suggested that the Flavonoids-Flavone (1), Flavonol (2),Isoflavone (3), Flavanone (4),Flavanonol (5), Flavan-3-ol (6),Epicatechin (7), Chalcone (8), Apigenin (9)have the lowest binding affinities and may be as effective SARS-CoV-2 inhibitors as Chloroquine. The presence of hydrogen bonds and various hydrophobic interactions between the flavonoid and the essential amino acid residues of the receptor were both suggested as explanations for the high binding affinity of flavonoids. Flavonoids have a high-lying HOMO, electrophilicity index, dipole moment and the highest chemical softness according to the DFT calculations. All of these factors could interact to varying degrees and have a significant impact on how well these Flavonoids bind to the active protein locations.
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How To Cite (APA)
Anamika Singh, Nikita Tiwari, Anshu Gautam, & Monika Gupta (June-2023). Virtual Screening of Flavonoids in Search of a Potential Drug Candidate for COVID-19: Applications of DFT Study and Molecular Docking. INTERNATIONAL JOURNAL OF NOVEL RESEARCH AND DEVELOPMENT, 8(6), d887-d909. http://doi.one/10.1729/Journal.35185
Issue
Volume 8 Issue 6, June-2023
Pages : d887-d909
Other Publication Details
Paper Reg. ID: IJNRD_199406
Published Paper Id: IJNRD2306394
Downloads: 000121984
Research Area: Chemistry
Country: LUCKNOW, Uttar Pradesh, India
Published Paper PDF: https://ijnrd.org/papers/IJNRD2306394.pdf
Published Paper URL: https://ijnrd.org/viewpaperforall?paper=IJNRD2306394
Crossref DOI: http://doi.one/10.1729/Journal.35185
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Journal Name: INTERNATIONAL JOURNAL OF NOVEL RESEARCH AND DEVELOPMENT(IJNRD)
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